Variant report

Variant	rs72864845
Chromosome Location	chr2:37579182-37579183
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37551825..37554292-chr2:37578586..37580717,2	K562	blood:

Variant related genes	Relation type
ENSG00000232028	Chromatin interaction
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57427583	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72864841	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37572600-37595400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:37576200-37579400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:37576800-37581400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:37577000-37590600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:37577200-37579800	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr2:37577400-37607000	Weak transcription	Spleen	Spleen
7	chr2:37577600-37581600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr2:37577600-37588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:37577800-37583200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr2:37577800-37583200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:37577800-37589000	Weak transcription	Left Ventricle	heart
12	chr2:37578200-37579400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr2:37578200-37605400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:37578400-37580400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr2:37578400-37581600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:37578400-37604200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:37578600-37579800	Weak transcription	NHDF-Ad	bronchial
18	chr2:37578600-37584600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr2:37578600-37584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:37578600-37601200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr2:37578800-37579800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr2:37578800-37602200	Weak transcription	Colon Smooth Muscle	Colon
23	chr2:37579000-37579800	Weak transcription	Monocytes-CD14+_RO01746	blood

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