Variant report

Variant	rs72864848
Chromosome Location	chr4:81635958-81635959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1486031	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16998198	0.88[ASN][1000 genomes]
rs17004982	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1948430	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017726	0.85[ASN][1000 genomes]
rs329397	0.87[ASN][1000 genomes]
rs329398	0.83[ASN][1000 genomes]
rs329399	0.86[ASN][1000 genomes]
rs329400	0.87[ASN][1000 genomes]
rs329404	0.89[ASN][1000 genomes]
rs329405	0.89[ASN][1000 genomes]
rs72863181	0.88[ASN][1000 genomes]
rs72864836	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72864878	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72864897	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002776	chr4:81480374-81802614	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv537154	chr4:81480374-81802614	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3518601	chr4:81523238-81831941	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3518602	chr4:81523354-81831976	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81631000-81640800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:81631600-81636200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:81633600-81637800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:81635400-81637200	Enhancers	Primary T cells from cord blood	blood
5	chr4:81635600-81636400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:81635800-81638200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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