Variant report

Variant	rs72865240
Chromosome Location	chr18:11736984-11736985
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16976822	1.00[ASN][1000 genomes]
rs16976823	1.00[ASN][1000 genomes]
rs28664701	1.00[ASN][1000 genomes]
rs59240143	1.00[ASN][1000 genomes]
rs6650615	1.00[ASN][1000 genomes]
rs72867047	1.00[AFR][1000 genomes]
rs9951817	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1065382	chr18:11723230-11769732	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11733600-11737600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr18:11736600-11737800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr18:11736600-11738400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr18:11736600-11739600	Enhancers	Fetal Brain Male	brain
5	chr18:11736800-11737000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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