Variant report

Variant	rs72866233
Chromosome Location	chr6:44341762-44341763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11572012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274832	1.00[EUR][1000 genomes]
rs72866262	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72867809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72867829	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1794353	chr6:44333489-44350716	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44335800-44342400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:44340400-44341800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:44340400-44342000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:44340400-44342000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:44340400-44342400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:44340400-44343000	Enhancers	HMEC	breast
7	chr6:44340400-44343000	Enhancers	NHEK	skin
8	chr6:44340600-44341800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:44341000-44341800	Weak transcription	Liver	Liver
10	chr6:44341000-44342600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:44341400-44342000	Enhancers	HSMM	muscle
12	chr6:44341400-44342200	Bivalent Enhancer	HUVEC	blood vessel
13	chr6:44341600-44342000	Enhancers	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links