Variant report

Variant	rs72866694
Chromosome Location	chr4:78744781-78744782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:78738764..78744926-chr4:78780904..78785516,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169288	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56754316	1.00[AFR][1000 genomes]
rs59899206	1.00[AFR][1000 genomes]
rs72864913	1.00[AFR][1000 genomes]
rs72864947	1.00[AFR][1000 genomes]
rs72866657	1.00[AFR][1000 genomes]
rs72868229	1.00[AFR][1000 genomes]
rs72868232	1.00[AFR][1000 genomes]
rs72868257	1.00[AFR][1000 genomes]
rs72868261	1.00[AFR][1000 genomes]
rs72868270	1.00[AFR][1000 genomes]
rs72868296	1.00[AFR][1000 genomes]
rs72869530	1.00[AFR][1000 genomes]
rs72869540	1.00[AFR][1000 genomes]
rs72869555	1.00[AFR][1000 genomes]
rs72869556	1.00[AFR][1000 genomes]
rs72869579	1.00[AFR][1000 genomes]
rs72869582	1.00[AFR][1000 genomes]
rs72869586	1.00[AFR][1000 genomes]
rs72871123	1.00[AFR][1000 genomes]
rs72871134	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829976	chr4:78576657-78757798	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv879501	chr4:78647634-78866007	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	esv1818157	chr4:78678104-78849088	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78742800-78744800	Enhancers	Primary B cells from peripheral blood	blood
2	chr4:78742800-78745000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:78742800-78745000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr4:78742800-78747200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:78743000-78745400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:78743200-78744800	Enhancers	Primary B cells from cord blood	blood
7	chr4:78743200-78745000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr4:78743200-78750000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr4:78743400-78745600	Enhancers	Primary T cells from cord blood	blood
10	chr4:78743400-78745600	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:78743400-78749800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:78743400-78750200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr4:78743800-78745000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr4:78743800-78747800	Weak transcription	Dnd41	blood
15	chr4:78743800-78748200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:78744000-78748600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:78744200-78748200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr4:78744400-78748600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:78744600-78745400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr4:78744600-78746000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr4:78744600-78746800	Weak transcription	Thymus	Thymus
22	chr4:78744600-78747000	Weak transcription	Fetal Thymus	thymus
23	chr4:78744600-78747200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:78744600-78748400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links