Variant report

Variant	rs72866806
Chromosome Location	chr4:80575066-80575067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16997834	0.87[AMR][1000 genomes]
rs17004048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59930049	0.87[AMR][1000 genomes]
rs61060966	1.00[AMR][1000 genomes]
rs72865056	0.87[AMR][1000 genomes]
rs72865067	0.87[AMR][1000 genomes]
rs72866814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72866878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80571800-80575400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:80572000-80575400	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:80572800-80575400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:80572800-80575600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:80572800-80575600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:80573000-80575200	Enhancers	Colon Smooth Muscle	Colon
7	chr4:80573200-80575200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:80573200-80575400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:80574400-80575200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr4:80574400-80575200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:80574800-80575400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr4:80574800-80575400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr4:80574800-80575600	Enhancers	NHEK	skin
14	chr4:80575000-80575600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:80575000-80575600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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