Variant report

Variant	rs72867268
Chromosome Location	chr6:44036289-44036290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:43736781..43738681-chr6:44035583..44037234,2	MCF-7	breast:
2	chr6:44030222..44032797-chr6:44035126..44037771,3	MCF-7	breast:
3	chr6:43730164..43744120-chr6:44034600..44052665,50	K562	blood:
4	chr6:43596893..43598722-chr6:44035498..44037676,2	K562	blood:
5	chr6:44028252..44030962-chr6:44034366..44036561,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112715	Chromatin interaction
ENSG00000124688	Chromatin interaction
ENSG00000172432	Chromatin interaction
ENSG00000272114	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs34978340	0.99[ASN][1000 genomes]
rs58635644	0.80[ASN][1000 genomes]
rs72867275	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72867277	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72867279	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72867290	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7763084	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44005800-44036800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:44022400-44040400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:44024000-44036600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:44030000-44040800	Weak transcription	Gastric	stomach
5	chr6:44030200-44040400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:44031200-44040600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:44031400-44036600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:44033200-44036400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:44033200-44040000	Enhancers	K562	blood
10	chr6:44033200-44040400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr6:44033400-44039400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:44033400-44040200	Weak transcription	Colonic Mucosa	Colon
13	chr6:44033600-44039400	Weak transcription	Fetal Heart	heart
14	chr6:44033800-44040200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:44034000-44039200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:44034000-44040000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:44034000-44040200	Weak transcription	Lung	lung
18	chr6:44034200-44036800	Enhancers	Fetal Muscle Leg	muscle
19	chr6:44034200-44038200	Enhancers	Hela-S3	cervix
20	chr6:44034400-44036600	Enhancers	Fetal Stomach	stomach
21	chr6:44034400-44039200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:44034600-44036400	Enhancers	HSMM	muscle
23	chr6:44034600-44036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:44034600-44040400	Weak transcription	Spleen	Spleen
25	chr6:44034800-44036600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:44034800-44036600	Enhancers	Placenta	Placenta
27	chr6:44034800-44036600	Bivalent Enhancer	HepG2	liver
28	chr6:44034800-44036800	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:44035000-44036400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:44035000-44036400	Enhancers	NHDF-Ad	bronchial
31	chr6:44035000-44036600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr6:44035000-44037000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:44035200-44036400	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr6:44035200-44036600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:44035200-44036600	Enhancers	Fetal Muscle Trunk	muscle
36	chr6:44035200-44039000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr6:44035200-44040000	Weak transcription	Fetal Intestine Small	intestine
38	chr6:44035400-44036600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:44035400-44037000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr6:44035400-44039400	Weak transcription	NHEK	skin
41	chr6:44035400-44040400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:44035600-44037000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:44035600-44039000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr6:44035600-44039600	Weak transcription	HSMMtube	muscle
45	chr6:44035600-44040200	Weak transcription	Pancreas	Pancrea
46	chr6:44035600-44040400	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:44035800-44039200	Weak transcription	Fetal Lung	lung
48	chr6:44035800-44039400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:44035800-44040000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr6:44035800-44040400	Weak transcription	Duodenum Mucosa	Duodenum

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