Variant report

Variant	rs72867862
Chromosome Location	chr11:17739255-17739256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17718094	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs17791331	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55715851	1.00[AFR][1000 genomes]
rs55789309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55994260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56335097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72855834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72867869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867883	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72867891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040065	chr11:17556031-17753467	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv467717	chr11:17713507-17791822	Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv553588	chr11:17713507-17791822	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv825772	chr11:17723530-17783128	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1037585	chr11:17730586-17768346	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17736800-17739800	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr11:17736800-17740400	Weak transcription	Psoas Muscle	Psoas
3	chr11:17736800-17740400	Weak transcription	HSMM	muscle
4	chr11:17736800-17740600	Weak transcription	HSMMtube	muscle
5	chr11:17736800-17741000	Weak transcription	Right Atrium	heart
6	chr11:17739000-17739800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:17739200-17740400	Bivalent Enhancer	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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