Variant report

Variant	rs72867963
Chromosome Location	chr4:79315123-79315124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17003113	1.00[EUR][1000 genomes]
rs17003116	1.00[EUR][1000 genomes]
rs17003143	1.00[EUR][1000 genomes]
rs17003172	1.00[EUR][1000 genomes]
rs56350158	1.00[EUR][1000 genomes]
rs57417744	1.00[EUR][1000 genomes]
rs60976791	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6827669	1.00[EUR][1000 genomes]
rs72867987	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv1010782	chr4:79057839-79387207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79284600-79353600	Weak transcription	Left Ventricle	heart
2	chr4:79288000-79318400	Weak transcription	Pancreas	Pancrea
3	chr4:79291800-79318200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:79295600-79338800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:79302400-79315400	Weak transcription	Psoas Muscle	Psoas
6	chr4:79302400-79315600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:79302400-79353800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:79308800-79317600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:79308800-79318600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:79309000-79331000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:79309200-79318600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:79309200-79334800	Weak transcription	Fetal Heart	heart
13	chr4:79310000-79330800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:79310800-79316400	Weak transcription	Fetal Kidney	kidney
15	chr4:79310800-79316600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr4:79310800-79321800	Weak transcription	HepG2	liver
17	chr4:79311000-79318400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:79311000-79318400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr4:79311000-79334600	Weak transcription	Fetal Lung	lung
20	chr4:79311200-79316200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:79312000-79316200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr4:79312000-79316400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr4:79312000-79318200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:79312200-79317200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:79313200-79316200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:79314000-79318400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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