Variant report

Variant	rs72869655
Chromosome Location	chr1:9703871-9703872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:9687124..9688740-chr1:9701648..9703981,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs61412539	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869644	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869645	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869651	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869654	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869660	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72869669	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7553125	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3385337	chr1:9105242-10082223	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	549 gene(s)	inside rSNPs	diseases
2	nsv871610	chr1:9655795-10008221	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3417409	chr1:9683992-10241703	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:9690400-9709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:9691400-9704000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:9697400-9711400	Weak transcription	Esophagus	oesophagus
4	chr1:9697800-9711400	Weak transcription	Right Atrium	heart
5	chr1:9698200-9708000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr1:9702000-9711400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:9702200-9709800	Weak transcription	Dnd41	blood
8	chr1:9702200-9711000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr1:9702600-9704000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr1:9702800-9704800	Enhancers	Primary B cells from cord blood	blood
11	chr1:9702800-9705000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:9702800-9705600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr1:9702800-9707400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:9702800-9711000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr1:9703000-9704000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr1:9703000-9705000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr1:9703000-9705000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr1:9703000-9705200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:9703000-9705600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr1:9703000-9705600	Enhancers	Fetal Thymus	thymus
21	chr1:9703000-9706600	Enhancers	Primary B cells from peripheral blood	blood
22	chr1:9703000-9711200	Enhancers	Primary T cells fromperipheralblood	blood
23	chr1:9703200-9704400	Enhancers	Spleen	Spleen
24	chr1:9703200-9704600	Enhancers	Adipose Nuclei	Adipose
25	chr1:9703200-9705600	Enhancers	Primary T killer memory cells from peripheral blood	blood
26	chr1:9703200-9706400	Enhancers	Primary hematopoietic stem cells	blood
27	chr1:9703600-9704200	Enhancers	K562	blood
28	chr1:9703600-9705400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr1:9703800-9704000	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr1:9703800-9704200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr1:9703800-9704200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:9703800-9704200	Enhancers	Brain Hippocampus Middle	brain
33	chr1:9703800-9704200	Enhancers	Placenta	Placenta
34	chr1:9703800-9704200	Flanking Active TSS	GM12878-XiMat	blood
35	chr1:9703800-9704400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr1:9703800-9704400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:9703800-9704400	Enhancers	Thymus	Thymus
38	chr1:9703800-9705000	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr1:9703800-9705400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:9703800-9705400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr1:9703800-9705400	Enhancers	Hela-S3	cervix

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