Variant report

Variant	rs72871138
Chromosome Location	chr4:78883935-78883936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:78883928-78884135	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000248926	TF binding region
HMGB1P44	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs57475713	1.00[AFR][1000 genomes]
rs59140464	1.00[AFR][1000 genomes]
rs59434555	1.00[AFR][1000 genomes]
rs59926102	1.00[AFR][1000 genomes]
rs60243365	1.00[AFR][1000 genomes]
rs72864981	1.00[AFR][1000 genomes]
rs72868204	1.00[AFR][1000 genomes]
rs72869523	1.00[AFR][1000 genomes]
rs72869526	1.00[AFR][1000 genomes]
rs72869551	1.00[AFR][1000 genomes]
rs72869567	1.00[AFR][1000 genomes]
rs72869576	1.00[AFR][1000 genomes]
rs72869581	1.00[AFR][1000 genomes]
rs72869595	1.00[AFR][1000 genomes]
rs72869597	1.00[AFR][1000 genomes]
rs72871103	1.00[AFR][1000 genomes]
rs72871112	1.00[AFR][1000 genomes]
rs72871117	1.00[AFR][1000 genomes]
rs72871118	1.00[AFR][1000 genomes]
rs72871124	1.00[AFR][1000 genomes]
rs72871133	1.00[AFR][1000 genomes]
rs72871136	1.00[AFR][1000 genomes]
rs72871155	1.00[AFR][1000 genomes]
rs72871157	1.00[AFR][1000 genomes]
rs72871162	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752050	chr4:78693311-78975321	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1010714	chr4:78742505-78991030	Weak transcription Genic enhancers Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv516836	chr4:78748977-78981919	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv594704	chr4:78748977-78981919	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv461562	chr4:78757015-78981919	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv461563	chr4:78757015-78981919	Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv594705	chr4:78757015-78981919	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv1008217	chr4:78777531-78957311	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv537145	chr4:78777531-78957311	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
11	nsv980221	chr4:78882244-78887179	Weak transcription Enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78874200-78884400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:78875400-78884000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr4:78876000-78884000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:78876200-78884000	Weak transcription	Primary T cells from cord blood	blood
5	chr4:78876200-78884000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:78876200-78884200	Weak transcription	Fetal Thymus	thymus
7	chr4:78883800-78884600	Enhancers	Primary T helper cells PMA-I stimulated	--

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