Variant report

Variant	rs72871727
Chromosome Location	chr11:18522316-18522317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10219146	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12283473	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16935557	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17392588	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1857909	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1973412	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271079	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2643868	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2658547	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72871724	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72871772	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876735	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876768	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72876784	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1038015	chr11:18435855-18558211	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv467719	chr11:18447611-18542227	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv553634	chr11:18447611-18542227	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18483600-18526200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:18496200-18538000	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:18496200-18541200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr11:18496400-18542000	Strong transcription	Primary T cells fromperipheralblood	blood
5	chr11:18496600-18540600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:18496600-18541000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:18500000-18547000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:18504000-18540600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr11:18504200-18522800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:18504600-18523400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:18504600-18523400	Weak transcription	Small Intestine	intestine
12	chr11:18504600-18523600	Weak transcription	HMEC	breast
13	chr11:18505200-18531800	Weak transcription	Fetal Brain Male	brain
14	chr11:18509000-18537600	Strong transcription	Liver	Liver
15	chr11:18509000-18540200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:18509000-18540600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr11:18509600-18540200	Strong transcription	Placenta	Placenta
18	chr11:18510800-18524400	Strong transcription	Dnd41	blood
19	chr11:18510800-18541400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr11:18511000-18524400	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr11:18511800-18527000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:18512800-18523400	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr11:18512800-18526800	Weak transcription	Spleen	Spleen
24	chr11:18513000-18522600	Weak transcription	Brain Hippocampus Middle	brain
25	chr11:18513000-18526800	Weak transcription	Pancreas	Pancrea
26	chr11:18513000-18544000	Weak transcription	Gastric	stomach
27	chr11:18513000-18544000	Weak transcription	Psoas Muscle	Psoas
28	chr11:18513000-18547600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:18513200-18523200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:18513200-18525400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:18513200-18532600	Weak transcription	Esophagus	oesophagus
32	chr11:18513400-18523200	Weak transcription	K562	blood
33	chr11:18513400-18523200	Weak transcription	NHEK	skin
34	chr11:18514000-18522600	Weak transcription	HUVEC	blood vessel
35	chr11:18514600-18540800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:18514800-18539800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:18515000-18537600	Strong transcription	Fetal Thymus	thymus
38	chr11:18515000-18540000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:18515000-18540600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:18515200-18538000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:18515400-18547200	Weak transcription	Stomach Mucosa	stomach
42	chr11:18515600-18522600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr11:18515600-18537600	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr11:18515600-18537800	Strong transcription	Fetal Intestine Large	intestine
45	chr11:18516200-18524400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr11:18516200-18524600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:18516200-18524600	Strong transcription	Fetal Brain Female	brain
48	chr11:18516200-18538200	Strong transcription	Adipose Nuclei	Adipose
49	chr11:18516200-18538800	Strong transcription	Fetal Muscle Trunk	muscle
50	chr11:18516200-18540400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links