Variant report

Variant	rs72874238
Chromosome Location	chr3:54813652-54813653
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs72870607	1.00[AMR][1000 genomes]
rs72870609	1.00[AMR][1000 genomes]
rs72870668	1.00[AMR][1000 genomes]
rs72870684	1.00[AMR][1000 genomes]
rs72870700	1.00[AMR][1000 genomes]
rs72872241	1.00[AMR][1000 genomes]
rs72872252	1.00[AMR][1000 genomes]
rs72872301	1.00[AMR][1000 genomes]
rs72874219	0.91[AFR][1000 genomes]
rs72874221	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874223	1.00[AMR][1000 genomes]
rs72874234	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54807600-54814400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:54807600-54836000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:54812800-54815600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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