Variant report

Variant	rs728752
Chromosome Location	chr3:98045202-98045203
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16839478	1.00[EUR][1000 genomes]
rs72939169	1.00[EUR][1000 genomes]
rs72939173	1.00[EUR][1000 genomes]
rs73854822	1.00[EUR][1000 genomes]
rs73854826	1.00[EUR][1000 genomes]
rs7640780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	esv34138	chr3:98034684-98045927	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98041200-98045800	Active TSS	H9 Cell Line	embryonic stem cell
2	chr3:98041400-98045600	Weak transcription	GM12878-XiMat	blood
3	chr3:98044000-98046400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:98044000-98047800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:98044000-98048400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:98044200-98045400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr3:98044400-98045400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr3:98044600-98045400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr3:98044600-98048400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:98044800-98046200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr3:98045000-98045400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
12	chr3:98045000-98045400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:98045200-98045400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr3:98045200-98045400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:98045200-98045800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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