Variant report

Variant	rs72875934
Chromosome Location	chr4:94654897-94654898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11935781	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17021046	0.90[AFR][1000 genomes]
rs60802566	1.00[AMR][1000 genomes]
rs72873082	0.85[AFR][1000 genomes]
rs72875904	0.86[AFR][1000 genomes]
rs72875919	1.00[AMR][1000 genomes]
rs72875921	0.90[AFR][1000 genomes]
rs72875938	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72875970	0.84[AFR][1000 genomes]
rs7697618	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008055	chr4:94169131-95030074	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv931979	chr4:94289958-95121723	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv821636	chr4:94439636-95116590	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1013018	chr4:94526959-94735442	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94651200-94655200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:94651600-94655000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:94651600-94655200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:94652000-94655800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:94653000-94655400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:94653200-94655000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:94653400-94658200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:94653600-94655000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:94653800-94656200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:94654400-94655600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:94654400-94669800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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