Variant report

Variant	rs72876855
Chromosome Location	chr2:48093753-48093754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:48084015..48085613-chr2:48093041..48095480,2	MCF-7	breast:
2	chr2:48092466..48094025-chr2:48100361..48102439,2	MCF-7	breast:
3	chr2:48091165..48093853-chr2:48095947..48099259,3	MCF-7	breast:
4	chr2:48093751..48095928-chr2:48132112..48133752,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233230	Chromatin interaction
ENSG00000138081	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs72876811	0.84[AFR][1000 genomes]
rs72876857	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876859	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72876870	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998096	chr2:47939614-48131697	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv1009769	chr2:47972642-48509765	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv535680	chr2:47972642-48509765	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv930955	chr2:48040218-48121218	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530831	chr2:48059709-48632317	Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv519831	chr2:48072855-48566031	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv523013	chr2:48073117-48146122	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv874000	chr2:48078838-48291582	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:48049200-48096000	Weak transcription	Gastric	stomach
2	chr2:48061400-48093800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:48064000-48095200	Weak transcription	Spleen	Spleen
4	chr2:48065400-48098200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:48065400-48114000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:48066000-48097400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr2:48066000-48100400	Weak transcription	Thymus	Thymus
8	chr2:48066200-48094600	Weak transcription	Fetal Kidney	kidney
9	chr2:48066400-48097600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr2:48066800-48094200	Weak transcription	HSMM	muscle
11	chr2:48066800-48094400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:48067000-48094200	Weak transcription	HMEC	breast
13	chr2:48067000-48094800	Weak transcription	K562	blood
14	chr2:48067000-48095800	Weak transcription	Fetal Thymus	thymus
15	chr2:48067000-48122000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr2:48067600-48097600	Weak transcription	Dnd41	blood
17	chr2:48067800-48094400	Weak transcription	Right Atrium	heart
18	chr2:48073000-48095200	Weak transcription	Right Ventricle	heart
19	chr2:48073000-48096000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr2:48073600-48100000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr2:48075600-48094400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr2:48075800-48095800	Weak transcription	Fetal Intestine Large	intestine
23	chr2:48077400-48094000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:48081200-48094200	Weak transcription	Fetal Lung	lung
25	chr2:48081400-48094000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr2:48083600-48094200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr2:48083800-48094000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr2:48083800-48096200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:48084400-48094200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr2:48084400-48108000	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr2:48085000-48093800	Weak transcription	Rectal Smooth Muscle	rectum
32	chr2:48085000-48094000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr2:48085000-48094200	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr2:48085200-48094200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr2:48085600-48094200	Weak transcription	NHEK	skin
36	chr2:48085600-48094400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr2:48085800-48094000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr2:48086000-48095000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr2:48087400-48093800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr2:48087400-48094200	Weak transcription	Fetal Brain Female	brain
41	chr2:48087600-48096000	Weak transcription	Placenta	Placenta
42	chr2:48088600-48095800	Weak transcription	Esophagus	oesophagus
43	chr2:48089200-48096000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:48089800-48094200	Weak transcription	Fetal Stomach	stomach
45	chr2:48089800-48095800	Weak transcription	Fetal Muscle Leg	muscle
46	chr2:48089800-48121000	Weak transcription	Aorta	Aorta
47	chr2:48090000-48094800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr2:48090000-48098200	Weak transcription	Fetal Intestine Small	intestine
49	chr2:48090800-48096000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr2:48091600-48093800	Enhancers	Primary T cells from cord blood	blood

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