Variant report

Variant	rs72877575
Chromosome Location	chr18:25366248-25366249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4239451	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4281798	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4294892	0.81[ASN][1000 genomes]
rs4569371	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7237557	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72877514	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1058084	chr18:25355165-25383779	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1056800	chr18:25357990-25379390	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25365600-25366600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr18:25365600-25367000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr18:25365800-25366400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25365800-25366400	Active TSS	Brain Cingulate Gyrus	brain
5	chr18:25365800-25366400	Enhancers	Fetal Muscle Trunk	muscle
6	chr18:25365800-25366400	Enhancers	Lung	lung
7	chr18:25365800-25366600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:25365800-25366600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr18:25365800-25366600	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr18:25365800-25366600	Active TSS	Brain Substantia Nigra	brain
11	chr18:25365800-25366600	Enhancers	Fetal Muscle Leg	muscle
12	chr18:25365800-25366800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr18:25366000-25366400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:25366000-25366600	Active TSS	Brain Angular Gyrus	brain
15	chr18:25366000-25366600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:25366200-25366600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr18:25366200-25366600	Active TSS	Brain Anterior Caudate	brain
18	chr18:25366200-25366600	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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