Variant report

Variant	rs72878839
Chromosome Location	chr4:90412853-90412854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs72880636	1.00[AFR][1000 genomes]
rs72882462	1.00[AFR][1000 genomes]
rs72882465	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2830400	chr4:90085456-90922432	Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1012406	chr4:90167781-91166787	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv949454	chr4:90272120-91156917	Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv830003	chr4:90331829-90538134	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2763375	chr4:90367678-90484894	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:90408600-90413200	Weak transcription	HSMM	muscle
2	chr4:90409000-90423800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:90409800-90413200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:90411000-90414800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:90411200-90413000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:90411600-90417600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:90412200-90413000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:90412200-90413200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr4:90412200-90414400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:90412400-90413600	Enhancers	HUVEC	blood vessel
11	chr4:90412600-90413000	Enhancers	Hela-S3	cervix
12	chr4:90412600-90413400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr4:90412600-90413600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
14	chr4:90412600-90413800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:90412600-90414200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:90412600-90414800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:90412600-90414800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr4:90412600-90414800	Enhancers	NHLF	lung
19	chr4:90412800-90413000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:90412800-90413400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
21	chr4:90412800-90413400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr4:90412800-90413600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr4:90412800-90414000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr4:90412800-90414400	Enhancers	Brain Germinal Matrix	brain
25	chr4:90412800-90414600	Enhancers	NHDF-Ad	bronchial
26	chr4:90412800-90414800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:90412800-90414800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr4:90412800-90415800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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