Variant report

Variant	rs72881024
Chromosome Location	chr6:56583742-56583743
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:56579501..56581287-chr6:56582321..56583913,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16888158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17684260	1.00[AFR][1000 genomes]
rs41271874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs45509696	1.00[AFR][1000 genomes]
rs72881014	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72881056	1.00[AFR][1000 genomes]
rs72881062	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv934026	chr6:56382056-57184218	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv533050	chr6:56504480-57297586	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1021651	chr6:56569444-56966319	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv538228	chr6:56569444-56966319	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56570000-56585600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:56570200-56590000	Weak transcription	Right Atrium	heart
3	chr6:56579400-56592000	Weak transcription	Lung	lung
4	chr6:56580800-56592000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:56580800-56595800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:56581000-56589200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:56581000-56589200	Weak transcription	HSMMtube	muscle
8	chr6:56581000-56590000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:56581200-56584000	Weak transcription	HepG2	liver
10	chr6:56581200-56587800	Weak transcription	Fetal Heart	heart
11	chr6:56581200-56589000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:56581200-56590200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:56581400-56588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:56581400-56588600	Weak transcription	Colon Smooth Muscle	Colon
15	chr6:56581400-56589200	Weak transcription	Brain Angular Gyrus	brain
16	chr6:56581400-56589200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:56581400-56592000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:56581600-56583800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr6:56581600-56584000	Weak transcription	NH-A	brain
20	chr6:56581600-56584200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:56581600-56584200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr6:56581600-56588600	Weak transcription	Brain Substantia Nigra	brain
23	chr6:56581600-56588600	Weak transcription	Psoas Muscle	Psoas
24	chr6:56581600-56588800	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:56581600-56588800	Weak transcription	NHDF-Ad	bronchial
26	chr6:56581600-56589000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:56581600-56589200	Weak transcription	NHLF	lung
28	chr6:56581600-56597800	Weak transcription	Fetal Brain Male	brain
29	chr6:56581800-56584000	Weak transcription	Osteobl	bone
30	chr6:56582400-56584600	ZNF genes & repeats	GM12878-XiMat	blood
31	chr6:56582400-56588600	Weak transcription	Brain Anterior Caudate	brain
32	chr6:56582600-56589200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:56582600-56589200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr6:56582600-56611600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:56582800-56584400	Weak transcription	Left Ventricle	heart
36	chr6:56582800-56585600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:56583000-56583800	Enhancers	HMEC	breast
38	chr6:56583000-56585200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:56583000-56589200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:56583200-56584400	Strong transcription	HSMM	muscle
41	chr6:56583400-56584600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr6:56583400-56584600	Enhancers	HUVEC	blood vessel
43	chr6:56583600-56583800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:56583600-56583800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr6:56583600-56584000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:56583600-56584200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr6:56583600-56591200	Weak transcription	NHEK	skin

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