Variant report

Variant	rs7288224
Chromosome Location	chr22:32357360-32357361
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:32357358-32357442	HUVEC	blood vessel:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	22:31864703-31891033..22:32354828-32357874	K562	blood:
2	22:32162110-32166713..22:32354828-32357874	GM12878	blood:
3	22:32012966-32043914..22:32354828-32357874	GM12878	blood:
4	22:32354828-32357874..22:32740683-32750950	K562	blood:
5	22:32102727-32109893..22:32354828-32357874	GM12878	blood:
6	22:32228866-32235273..22:32354828-32357874	K562	blood:
7	22:32170492-32188129..22:32354828-32357874	Hela-S3	cervix:
8	22:32096851-32100847..22:32354828-32357874	K562	blood:
9	22:32264718-32278135..22:32354828-32357874	K562	blood:
10	22:32053085-32061138..22:32354828-32357874	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000227519	TF binding region
ENSG00000100150	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000252909	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000183530	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10427956	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11912760	0.96[YRI][hapmap];0.90[AFR][1000 genomes]
rs16989702	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16989787	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs16989893	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2005478	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57608399	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59386674	0.88[EUR][1000 genomes]
rs59490415	1.00[ASN][1000 genomes]
rs59543017	0.82[EUR][1000 genomes]
rs7289301	0.82[EUR][1000 genomes]
rs7291522	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055450	chr22:32356150-32468832	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32342400-32357600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:32351200-32366000	Weak transcription	Stomach Mucosa	stomach
3	chr22:32351400-32366400	Weak transcription	Right Atrium	heart
4	chr22:32352600-32358600	Weak transcription	Fetal Heart	heart
5	chr22:32353000-32357400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:32353000-32366000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr22:32353000-32366000	Weak transcription	Esophagus	oesophagus
8	chr22:32353000-32366000	Weak transcription	Gastric	stomach
9	chr22:32353000-32366200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr22:32353200-32359400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr22:32353200-32360400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr22:32353200-32365800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr22:32353400-32366000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr22:32353400-32366400	Weak transcription	Psoas Muscle	Psoas
15	chr22:32353600-32365400	Weak transcription	GM12878-XiMat	blood
16	chr22:32353800-32359000	Weak transcription	Small Intestine	intestine
17	chr22:32353800-32365600	Weak transcription	NHEK	skin
18	chr22:32354000-32357800	Weak transcription	Hela-S3	cervix
19	chr22:32354000-32358600	Weak transcription	Fetal Kidney	kidney
20	chr22:32354000-32366200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr22:32354200-32365600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr22:32354200-32365800	Weak transcription	K562	blood
23	chr22:32354200-32366000	Weak transcription	Primary B cells from cord blood	blood
24	chr22:32354400-32358600	Weak transcription	Right Ventricle	heart
25	chr22:32354400-32358800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr22:32354400-32359200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr22:32354400-32365800	Weak transcription	Brain Anterior Caudate	brain
28	chr22:32354400-32366400	Weak transcription	Colonic Mucosa	Colon
29	chr22:32354600-32357400	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr22:32354600-32357600	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr22:32354600-32357600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr22:32354600-32358600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr22:32354600-32358600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr22:32354600-32358600	Weak transcription	Placenta	Placenta
35	chr22:32354600-32358800	Weak transcription	Ovary	ovary
36	chr22:32354600-32359800	Weak transcription	Lung	lung
37	chr22:32354600-32360200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr22:32354600-32363400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr22:32354600-32365800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr22:32354600-32366000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr22:32354600-32366000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr22:32354600-32366000	Weak transcription	Fetal Lung	lung
43	chr22:32354600-32366200	Weak transcription	Liver	Liver
44	chr22:32354600-32366200	Weak transcription	Brain Angular Gyrus	brain
45	chr22:32354600-32366400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr22:32354600-32366400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr22:32354600-32366400	Weak transcription	NHLF	lung
48	chr22:32354800-32357400	Weak transcription	HUVEC	blood vessel
49	chr22:32354800-32358000	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr22:32354800-32359800	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links