Variant report

Variant	rs72882697
Chromosome Location	chr2:173177718-173177719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4496307	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55889669	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56019642	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56105609	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56173730	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56207281	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57473898	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60492030	0.93[EUR][1000 genomes]
rs68170745	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72884220	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72886051	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3034	chr2:173160295-173200113	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173170600-173178000	Weak transcription	Spleen	Spleen
2	chr2:173173000-173178000	Weak transcription	Lung	lung
3	chr2:173173000-173178200	Weak transcription	Fetal Thymus	thymus
4	chr2:173173000-173181600	Weak transcription	Right Atrium	heart
5	chr2:173173600-173178000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:173173800-173178000	Weak transcription	Right Ventricle	heart
7	chr2:173176200-173178800	Enhancers	Fetal Muscle Leg	muscle
8	chr2:173177200-173178000	Weak transcription	Left Ventricle	heart
9	chr2:173177200-173178400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:173177200-173178400	Weak transcription	Pancreas	Pancrea
11	chr2:173177400-173177800	Weak transcription	Fetal Muscle Trunk	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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