Variant report

Variant	rs7288403
Chromosome Location	chr22:28665871-28665872
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1303845	1.00[YRI][hapmap]
rs17503350	1.00[YRI][hapmap]
rs4822952	1.00[YRI][hapmap]
rs7292193	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28651800-28690600	Weak transcription	Dnd41	blood
2	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
3	chr22:28656800-28666000	Weak transcription	Small Intestine	intestine
4	chr22:28657000-28691600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:28659400-28671200	Weak transcription	Fetal Lung	lung
6	chr22:28662400-28666200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr22:28662800-28666200	Enhancers	Colon Smooth Muscle	Colon
8	chr22:28662800-28671200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr22:28662800-28671200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr22:28663000-28671000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr22:28664000-28666000	Enhancers	Right Ventricle	heart
12	chr22:28664400-28666400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr22:28664400-28671800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr22:28664400-28674800	Weak transcription	NHDF-Ad	bronchial
15	chr22:28665000-28666200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr22:28665200-28666000	Enhancers	Aorta	Aorta
17	chr22:28665200-28666000	Weak transcription	Left Ventricle	heart
18	chr22:28665200-28671000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr22:28665400-28666000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr22:28665600-28666000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr22:28665600-28677600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr22:28665800-28666000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr22:28665800-28666200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr22:28665800-28666400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links