Variant report

Variant	rs72884297
Chromosome Location	chr6:76632026-76632027
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:76619396..76621824-chr6:76631745..76633699,2	K562	blood:
2	chr6:76626564..76629624-chr6:76630461..76633607,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11756446	1.00[AFR][1000 genomes]
rs11757208	1.00[AFR][1000 genomes]
rs1322550	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021090	chr6:76306100-76759397	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv538318	chr6:76306100-76759397	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1032961	chr6:76343575-76788852	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv932201	chr6:76365548-77219650	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
5	nsv1028340	chr6:76410921-76960225	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv538319	chr6:76410921-76960225	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:76574400-76632600	Weak transcription	Spleen	Spleen
2	chr6:76584800-76644600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:76585800-76644600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:76594600-76632200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:76620600-76644400	Weak transcription	HUVEC	blood vessel
6	chr6:76621600-76632200	Weak transcription	Right Ventricle	heart
7	chr6:76622000-76640400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:76622600-76633800	Weak transcription	Small Intestine	intestine
9	chr6:76623200-76644600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:76623800-76644400	Weak transcription	Stomach Mucosa	stomach
11	chr6:76624000-76632200	Strong transcription	Duodenum Mucosa	Duodenum
12	chr6:76624800-76632600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:76624800-76635200	Weak transcription	Esophagus	oesophagus
14	chr6:76624800-76640600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:76624800-76640600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:76625000-76632600	Weak transcription	Placenta	Placenta
17	chr6:76625000-76637000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:76625000-76644600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:76625200-76636200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:76625600-76632400	Weak transcription	Brain Substantia Nigra	brain
21	chr6:76625600-76641400	Weak transcription	Fetal Kidney	kidney
22	chr6:76627000-76642800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:76627400-76636200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:76627400-76636400	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:76627400-76636400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:76627600-76636400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:76628400-76644600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:76629600-76635200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr6:76629800-76640400	Weak transcription	Aorta	Aorta
30	chr6:76629800-76640600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:76630000-76635600	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:76630000-76640000	Weak transcription	Fetal Intestine Small	intestine
33	chr6:76630200-76632200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:76630200-76633000	Weak transcription	Ovary	ovary
35	chr6:76630200-76633400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr6:76630200-76633800	Weak transcription	Left Ventricle	heart
37	chr6:76630200-76634600	Weak transcription	Pancreas	Pancrea
38	chr6:76630200-76640600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:76630200-76643200	Weak transcription	Liver	Liver
40	chr6:76630200-76643400	Weak transcription	Lung	lung
41	chr6:76630200-76644400	Weak transcription	Brain Anterior Caudate	brain
42	chr6:76630400-76632600	Weak transcription	Brain Angular Gyrus	brain
43	chr6:76630400-76632800	Weak transcription	Fetal Intestine Large	intestine
44	chr6:76630400-76633200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:76630400-76644600	Weak transcription	Adipose Nuclei	Adipose
46	chr6:76630600-76640400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr6:76631600-76634000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:76631600-76644600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:76631800-76632200	Enhancers	HMEC	breast
50	chr6:76631800-76632400	Enhancers	NHEK	skin

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