Variant report

Variant	rs72886084
Chromosome Location	chr2:52856519-52856520
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr2:52856495-52856545	HCPEpiC	choroid plexus:	n/a
2	chr2:52856495-52856545	SAEC	small airway:	n/a
3	chr2:52856495-52856545	SK-N-SH_RA	brain:	n/a
4	chr2:52856495-52856545	Jurkat	blood:	n/a
5	chr2:52856495-52856545	SK-N-SH	brain:	n/a
6	chr2:52856495-52856545	GM12891	blood:	n/a
7	chr2:52856495-52856545	LNCaP	prostate:	n/a
8	chr2:52856495-52856545	Hepatocyte	liver:	n/a
9	chr2:52856495-52856545	ECC-1	luminal epithelium:	n/a
10	chr2:52856495-52856545	ovcar-3	ovarian:	n/a
11	chr2:52856495-52856545	NHBE	bronchial:	n/a
12	chr2:52856495-52856545	GM06990	blood:	n/a
13	chr2:52856495-52856545	AoSMC	blood vessel:	n/a
14	chr2:52856495-52856545	GM12892	blood:	n/a
15	chr2:52856495-52856545	SKMC	muscle:	n/a
16	chr2:52856495-52856545	K562	blood:	n/a
17	chr2:52856495-52856545	BE2_C	brain:	n/a
18	chr2:52856495-52856545	HPAEpiC	pulmonary alveolar:	n/a
19	chr2:52856495-52856545	HCT-116	colon:	n/a
20	chr2:52856495-52856545	ProgFib	skin:	n/a
21	chr2:52856495-52856545	HCF	heart:	n/a
22	chr2:52856495-52856545	HEK293	kidney:	embryo
23	chr2:52856495-52856545	AG04449	skin:	fetal
24	chr2:52856495-52856545	AG04450	lung:	fetal
25	chr2:52856495-52856545	HAEpiC	amniotic membrane:	n/a
26	chr2:52856495-52856545	PrEC	prostate:	n/a
27	chr2:52856495-52856545	NH-A	brain:	n/a
28	chr2:52856495-52856545	BJ	skin:	n/a
29	chr2:52856495-52856545	NT2-D1	testis:	n/a
30	chr2:52856495-52856545	MCF10A-Er-Src	breast:	n/a
31	chr2:52856495-52856545	AG09309	skin:	n/a
32	chr2:52856495-52856545	HCM	heart:	n/a
33	chr2:52856495-52856545	U87	brain:	n/a
34	chr2:52856495-52856545	HUVEC	blood vessel:	n/a
35	chr2:52856495-52856545	HEEpiC	esophagus:	n/a
36	chr2:52856495-52856545	HRCEpiC	kidney:	n/a
37	chr2:52856495-52856545	RPTEC	kidney:	n/a
38	chr2:52856495-52856545	HRE	kidney:	n/a
39	chr2:52856495-52856545	HL-60	blood:	n/a
40	chr2:52856495-52856545	PFSK-1	brain:	n/a
41	chr2:52856495-52856545	HMEC	breast:	n/a
42	chr2:52856495-52856545	A549	lung:	n/a
43	chr2:52856495-52856545	AG10803	skin:	n/a
44	chr2:52856495-52856545	HNPCEpiC	eye:	n/a
45	chr2:52856495-52856545	GM12878	blood:	n/a
46	chr2:52856495-52856545	NHDF-neo	bronchial:	n/a
47	chr2:52856495-52856545	Hela-S3	cervix:	n/a
48	chr2:52856495-52856545	CMK	blood:	n/a
49	chr2:52856495-52856545	IMR90	lung:	fetal
50	chr2:52856495-52856545	NB4	blood:	n/a

No data

Variant related genes	Relation type
FTH1P6	CpG island

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57167370	1.00[AMR][1000 genomes]
rs57278823	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888134	1.00[AMR][1000 genomes]
rs72888142	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007633	chr2:52217555-52862389	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535714	chr2:52217555-52862389	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv874111	chr2:52383698-52962055	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	esv2754871	chr2:52695749-52922949	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv834036	chr2:52727240-52916200	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2755042	chr2:52739102-52883790	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1011103	chr2:52754456-52885219	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1004275	chr2:52754716-52885219	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1004695	chr2:52766349-52928948	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1011857	chr2:52787949-52945590	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
11	nsv874127	chr2:52797840-52933307	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	nsv874128	chr2:52814504-52859829	Enhancers ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv874129	chr2:52826401-52894897	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1013130	chr2:52829113-52893487	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv1007761	chr2:52829150-52893165	Weak transcription ZNF genes & repeats Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv581973	chr2:52829458-52878758	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv517582	chr2:52829458-52893165	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv581974	chr2:52829458-52893165	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv874130	chr2:52829458-52894897	ZNF genes & repeats Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv1009555	chr2:52835135-52893487	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
21	nsv533650	chr2:52844384-52885500	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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