Variant report

Variant	rs72886605
Chromosome Location	chr3:59748661-59748662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11920301	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72884801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615466	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7623130	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59738400-59749000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr3:59738400-59749200	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr3:59738800-59754400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr3:59740000-59749000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:59741600-59757800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:59743400-59750200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:59745000-59748800	Weak transcription	NHDF-Ad	bronchial
8	chr3:59745200-59757000	Weak transcription	Dnd41	blood
9	chr3:59745400-59751200	Weak transcription	Osteobl	bone
10	chr3:59745600-59751200	Weak transcription	Fetal Lung	lung
11	chr3:59745600-59752200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:59746200-59750600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:59746400-59749000	Weak transcription	Stomach Mucosa	stomach
14	chr3:59746800-59749600	Weak transcription	Fetal Thymus	thymus
15	chr3:59746800-59757400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr3:59747000-59751000	Weak transcription	Primary T cells from cord blood	blood
17	chr3:59747000-59757200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr3:59747200-59757000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:59747800-59749400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr3:59747800-59750600	Enhancers	Fetal Stomach	stomach
21	chr3:59748000-59749000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:59748400-59748800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr3:59748400-59752600	Enhancers	Fetal Muscle Leg	muscle
24	chr3:59748600-59752200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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