Variant report

Variant	rs72887919
Chromosome Location	chr3:46096517-46096518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46095387..46098200-chr3:46100479..46102760,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs55892227	0.85[AMR][1000 genomes]
rs55956323	0.85[AMR][1000 genomes]
rs56405718	0.85[AMR][1000 genomes]
rs56905314	0.85[AMR][1000 genomes]
rs58403651	0.85[AMR][1000 genomes]
rs58477700	0.85[AMR][1000 genomes]
rs59118905	0.83[AMR][1000 genomes]
rs59173279	0.85[AMR][1000 genomes]
rs59463328	0.85[AMR][1000 genomes]
rs59539425	0.85[AMR][1000 genomes]
rs72887139	0.83[AMR][1000 genomes]
rs72889740	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72889757	0.85[AMR][1000 genomes]
rs72889761	0.85[AMR][1000 genomes]
rs72889763	0.85[AMR][1000 genomes]
rs72889772	0.85[AMR][1000 genomes]
rs72889774	0.85[AMR][1000 genomes]
rs72889785	0.85[AMR][1000 genomes]
rs72889790	0.85[AMR][1000 genomes]
rs72889791	0.85[AMR][1000 genomes]
rs72889793	0.85[AMR][1000 genomes]
rs72891122	0.85[AMR][1000 genomes]
rs72891124	1.00[AMR][1000 genomes]
rs72891503	0.85[AMR][1000 genomes]
rs72891504	0.85[AMR][1000 genomes]
rs72891505	0.85[AMR][1000 genomes]
rs72891509	0.85[AMR][1000 genomes]
rs72901044	0.83[AMR][1000 genomes]
rs72907767	1.00[AMR][1000 genomes]
rs73830741	0.85[AMR][1000 genomes]
rs73830746	0.85[AMR][1000 genomes]
rs73830756	0.85[AMR][1000 genomes]
rs73833514	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv2756987	chr3:46016464-46120400	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv2759145	chr3:46016464-46120400	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1805205	chr3:46032847-46111081	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46095400-46096600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:46096000-46099200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr3:46096400-46099000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr3:46096400-46106200	Weak transcription	Lung	lung

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