Variant report

Variant	rs72888004
Chromosome Location	chr4:98119313-98119314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs72885946	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885957	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885980	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885984	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885987	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885989	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72885993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72885994	0.83[AMR][1000 genomes]
rs72886000	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888007	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888010	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72888019	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1002766	chr4:98006688-98128416	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537192	chr4:98006688-98128416	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98118400-98119600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:98118600-98119400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:98119000-98119400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr4:98119200-98119600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:98119200-98119800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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