Variant report

Variant	rs7288846
Chromosome Location	chr22:23623284-23623285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr22:23623112-23623403	K562	blood:	n/a	n/a
2	NR2F2	chr22:23622796-23624915	K562	blood:	n/a	n/a
3	ATF3	chr22:23623210-23625093	K562	blood:	n/a	n/a
4	POLR2A	chr22:23620853-23632783	K562	blood:	n/a	n/a
5	POLR2A	chr22:23622413-23624327	K562	blood:	n/a	n/a
6	TEAD4	chr22:23621762-23625090	K562	blood:	n/a	n/a
7	POLR2A	chr22:23623141-23623485	HUVEC	blood vessel:	n/a	n/a
8	POLR2A	chr22:23620818-23625944	K562	blood:	n/a	n/a
9	POLR2A	chr22:23622555-23625057	K562	blood:	n/a	n/a
10	ETS1	chr22:23623077-23624676	K562	blood:	n/a	chr22:23623595-23623608 chr22:23623970-23623977
11	ELF1	chr22:23623036-23624561	GM12878	blood:	n/a	chr22:23624242-23624254
12	SETDB1	chr22:23623120-23625448	K562	blood:	n/a	n/a
13	THAP1	chr22:23622320-23625164	K562	blood:	n/a	n/a
14	POLR2A	chr22:23623280-23623285	HepG2	liver:	n/a	n/a
15	CTCF	chr22:23623200-23624973	K562	blood:	n/a	chr22:23624174-23624195 chr22:23624181-23624194 chr22:23624179-23624197 chr22:23624180-23624196
16	GABPA	chr22:23622941-23625096	K562	blood:	n/a	chr22:23624511-23624520
17	SMC3	chr22:23622991-23624923	SK-N-SH	brain:	n/a	chr22:23624181-23624195
18	MAX	chr22:23623229-23624621	K562	blood:	n/a	chr22:23623500-23623511 chr22:23623499-23623512 chr22:23623500-23623510 chr22:23623500-23623511 chr22:23623501-23623510 chr22:23624536-23624545 chr22:23624535-23624544 chr22:23623499-23623512 chr22:23623501-23623511 chr22:23623501-23623511 chr22:23623500-23623511 chr22:23623500-23623510 chr22:23623499-23623512
19	POLR2A	chr22:23622971-23623365	H1-hESC	embryonic stem cell:	n/a	n/a
20	POLR2A	chr22:23621086-23630578	K562	blood:	n/a	n/a
21	HMGN3	chr22:23622723-23625496	K562	blood:	n/a	chr22:23624537-23624546 chr22:23624534-23624543
22	STAT5A	chr22:23622985-23623375	K562	blood:	n/a	chr22:23623040-23623052
23	CCNT2	chr22:23622946-23624720	K562	blood:	n/a	chr22:23623870-23623879
24	CHD2	chr22:23623136-23623331	K562	blood:	n/a	n/a
25	NR2F2	chr22:23623223-23624499	K562	blood:	n/a	n/a
26	ETS1	chr22:23622981-23625218	K562	blood:	n/a	chr22:23623595-23623608 chr22:23623970-23623977
27	POLR2A	chr22:23622184-23624564	K562	blood:	n/a	n/a
28	CBX3	chr22:23622982-23624702	K562	blood:	n/a	n/a
29	ZNF263	chr22:23621092-23625040	K562	blood:	n/a	chr22:23623971-23623980 chr22:23624279-23624288
30	TBL1XR1	chr22:23622978-23624853	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr22:23516262..23516815-chr22:23622923..23623913,2	MCF-7	breast:
2	chr22:23515760..23516798-chr22:23622035..23623640,7	K562	blood:
3	chr22:23520289..23523680-chr22:23623216..23625593,134	K562	blood:
4	chr22:23519910..23521360-chr22:23623104..23624706,17	MCF-7	breast:
5	chr22:23620816..23623842-chr9:133607688..133610225,3	K562	blood:
6	chr22:23520909..23526395-chr22:23622717..23628021,9	MCF-7	breast:
7	chr22:23519615..23526434-chr22:23614924..23625964,20	MCF-7	breast:
8	chr22:23533489..23536061-chr22:23622372..23624122,2	MCF-7	breast:
9	chr22:23301037..23302377-chr22:23623248..23624813,25	K562	blood:
10	chr22:23622356..23623880-chr22:23626085..23628786,2	MCF-7	breast:
11	chr22:23487477..23488368-chr22:23623236..23624212,2	K562	blood:

Variant related genes	Relation type
BCR	TF binding region
ENSG00000186716	Chromatin interaction
ENSG00000100228	Chromatin interaction
ENSG00000236794	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11090227	0.86[AMR][1000 genomes]
rs11090228	0.94[ASW][hapmap];0.83[GIH][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs11704376	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs11704598	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs11704766	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs11912632	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs11912657	0.87[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11912682	0.87[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs11913665	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs12483810	1.00[ASN][1000 genomes]
rs12483835	1.00[CHB][hapmap]
rs12484271	1.00[ASN][1000 genomes]
rs12484705	1.00[ASN][1000 genomes]
rs12484731	1.00[ASN][1000 genomes]
rs13054277	0.86[EUR][1000 genomes]
rs13054840	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs16802	0.87[ASW][hapmap];0.81[AMR][1000 genomes]
rs1811017	0.87[CEU][hapmap];0.85[AMR][1000 genomes]
rs1811018	0.85[AMR][1000 genomes]
rs2227939	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2330369	0.87[CEU][hapmap];0.85[AMR][1000 genomes]
rs35837404	0.86[EUR][1000 genomes]
rs3788358	0.81[GIH][hapmap];0.84[AMR][1000 genomes]
rs5751619	0.81[AMR][1000 genomes]
rs5759669	0.85[AMR][1000 genomes]
rs5759670	0.85[AMR][1000 genomes]
rs5759675	0.87[CEU][hapmap];0.88[AMR][1000 genomes]
rs5759679	0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs5759681	1.00[ASW][hapmap];0.83[GIH][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs5759682	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs5996513	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs6003586	0.82[CEU][hapmap]
rs6003593	0.85[AMR][1000 genomes]
rs6003598	0.88[AMR][1000 genomes]
rs6003600	0.88[AMR][1000 genomes]
rs62219795	0.86[EUR][1000 genomes]
rs62219796	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7289192	0.87[CEU][hapmap];0.92[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes]
rs7291469	0.87[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs7292656	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs743584	0.87[CEU][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs8139664	0.87[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs8141608	0.85[EUR][1000 genomes]
rs8141706	0.86[EUR][1000 genomes]
rs9608094	0.87[CEU][hapmap];0.86[EUR][1000 genomes]
rs9608095	0.85[EUR][1000 genomes]
rs9608097	0.84[EUR][1000 genomes]
rs9608100	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9608101	0.83[EUR][1000 genomes]
rs9612266	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs9612268	0.84[EUR][1000 genomes]
rs9612269	0.85[AMR][1000 genomes]
rs9612270	0.87[CEU][hapmap];0.92[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs9612272	0.84[EUR][1000 genomes]
rs9612273	0.86[EUR][1000 genomes]
rs9612275	0.86[CEU][hapmap];0.86[EUR][1000 genomes]
rs9612276	0.86[EUR][1000 genomes]
rs9612277	0.86[EUR][1000 genomes]
rs9612281	0.84[EUR][1000 genomes]
rs9620235	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9624074	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915235	chr22:22971768-23650987	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
2	esv3388845	chr22:22973346-23652447	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	100 gene(s)	inside rSNPs	diseases
3	nsv531799	chr22:22993679-23642142	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
4	nsv1061433	chr22:22997799-23649107	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
5	nsv521695	chr22:22998337-23648009	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
6	nsv915236	chr22:22998337-23650987	Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
7	nsv588512	chr22:22998337-23667731	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
8	nsv531800	chr22:23002708-23648163	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
9	nsv916593	chr22:23002709-23648790	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
10	nsv993496	chr22:23002709-23654222	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
11	nsv1067002	chr22:23007167-23643363	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
12	nsv1067324	chr22:23007367-23654223	Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
13	nsv533839	chr22:23012013-23643223	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
14	nsv916933	chr22:23012069-23654237	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	97 gene(s)	inside rSNPs	diseases
15	nsv531801	chr22:23028586-23657804	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	92 gene(s)	inside rSNPs	diseases
16	nsv531802	chr22:23046186-23627391	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	85 gene(s)	inside rSNPs	diseases
17	nsv1060509	chr22:23055148-23648719	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	83 gene(s)	inside rSNPs	diseases
18	nsv1056324	chr22:23055148-23750989	Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
19	nsv1062780	chr22:23060449-23648719	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
20	nsv948942	chr22:23063178-23645718	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
21	nsv1063200	chr22:23097177-23643224	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	80 gene(s)	inside rSNPs	diseases
22	nsv949250	chr22:23157485-23645718	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
23	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
24	nsv588598	chr22:23530168-23638025	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
25	nsv9876	chr22:23563331-23923059	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
26	nsv482557	chr22:23584948-23741799	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
27	nsv531550	chr22:23589667-24012550	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
28	esv2762117	chr22:23592136-23996869	Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
29	nsv1063476	chr22:23596683-23989388	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
30	nsv544617	chr22:23596683-23989388	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
31	nsv1059951	chr22:23597270-23973060	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
32	nsv1060339	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
33	nsv544618	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
34	nsv1059384	chr22:23614429-23984195	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
35	nsv544619	chr22:23614429-23984195	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7288846	BCR	cis	multi-tissue	Pritchard
rs7288846	GSC2	cis	cerebellum	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23595000-23647000	Strong transcription	Dnd41	blood
2	chr22:23595200-23623600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:23595400-23623800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr22:23595600-23623600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:23595800-23623400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr22:23595800-23649600	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr22:23599400-23635000	Weak transcription	Small Intestine	intestine
8	chr22:23600200-23632000	Strong transcription	Fetal Intestine Small	intestine
9	chr22:23601200-23623800	Weak transcription	Fetal Brain Male	brain
10	chr22:23601800-23641000	Strong transcription	Primary T cells from cord blood	blood
11	chr22:23603400-23631600	Strong transcription	Fetal Intestine Large	intestine
12	chr22:23604600-23623600	Strong transcription	Placenta	Placenta
13	chr22:23605200-23623400	Strong transcription	Spleen	Spleen
14	chr22:23605600-23623600	Strong transcription	Fetal Stomach	stomach
15	chr22:23606800-23623600	Weak transcription	HSMM	muscle
16	chr22:23608200-23623600	Weak transcription	NHDF-Ad	bronchial
17	chr22:23608800-23649400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr22:23609000-23623400	Strong transcription	Thymus	Thymus
19	chr22:23610200-23623400	Strong transcription	Brain Germinal Matrix	brain
20	chr22:23610400-23623600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr22:23611400-23623600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr22:23612200-23623600	Strong transcription	HepG2	liver
23	chr22:23612600-23623400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr22:23612600-23623600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr22:23612600-23623800	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr22:23612600-23647800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr22:23613000-23623400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr22:23613000-23623800	Strong transcription	K562	blood
29	chr22:23613000-23629600	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr22:23613000-23640800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr22:23613400-23623600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr22:23616200-23623800	Weak transcription	A549	lung
33	chr22:23616600-23623600	Weak transcription	NH-A	brain
34	chr22:23616600-23639000	Weak transcription	Fetal Kidney	kidney
35	chr22:23616800-23637200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr22:23617400-23623600	Weak transcription	Osteobl	bone
37	chr22:23618200-23623600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr22:23618200-23623800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr22:23618200-23628600	Weak transcription	Fetal Lung	lung
40	chr22:23618800-23623400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr22:23619200-23623800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr22:23619200-23625800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr22:23619400-23626600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr22:23619800-23623600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr22:23619800-23623600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr22:23619800-23623800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr22:23620000-23625000	Genic enhancers	Gastric	stomach
48	chr22:23620000-23626400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr22:23620200-23623800	Weak transcription	Ovary	ovary
50	chr22:23620200-23624000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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