Variant report

Variant	rs72888663
Chromosome Location	chr3:61563684-61563685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:61545628..61548916-chr3:61562079..61565903,3	MCF-7	breast:
2	chr3:61546749..61548988-chr3:61561025..61564365,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144724	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs72888619	1.00[AMR][1000 genomes]
rs72888624	1.00[AMR][1000 genomes]
rs72888626	1.00[AMR][1000 genomes]
rs72888639	1.00[AMR][1000 genomes]
rs72888645	1.00[AMR][1000 genomes]
rs72888649	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432423	chr3:61100255-61606060	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv834711	chr3:61413762-61612539	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1008615	chr3:61455419-61679037	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:61550600-61568600	Weak transcription	Pancreas	Pancrea
2	chr3:61550800-61574200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr3:61551600-61563800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr3:61553600-61566400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr3:61556200-61564000	Weak transcription	HepG2	liver
6	chr3:61558000-61563800	Weak transcription	Adipose Nuclei	Adipose
7	chr3:61558000-61564000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:61558200-61563800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:61558400-61579800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:61558800-61566600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:61560000-61564400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr3:61560000-61567000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:61560600-61563800	Weak transcription	Lung	lung
14	chr3:61560600-61566800	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:61560600-61575200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:61560800-61563800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:61560800-61564200	Weak transcription	Fetal Intestine Small	intestine
18	chr3:61560800-61568800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr3:61560800-61568800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr3:61560800-61569400	Weak transcription	NHEK	skin
21	chr3:61560800-61575200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr3:61561000-61563800	Weak transcription	Right Ventricle	heart
23	chr3:61561000-61566400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:61561200-61564000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:61561600-61565800	Enhancers	Fetal Heart	heart
26	chr3:61561800-61569200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr3:61562200-61563800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr3:61562200-61563800	Weak transcription	Aorta	Aorta
29	chr3:61562200-61565000	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr3:61562200-61566400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:61562200-61566400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr3:61562400-61563800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:61562400-61563800	Weak transcription	Left Ventricle	heart
34	chr3:61562400-61564200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr3:61562400-61564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:61562400-61566600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:61562400-61566600	Weak transcription	HSMMtube	muscle
38	chr3:61562400-61568200	Weak transcription	Ovary	ovary
39	chr3:61562400-61575200	Weak transcription	HSMM	muscle
40	chr3:61562400-61578600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr3:61563000-61564000	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr3:61563000-61564200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr3:61563000-61566400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr3:61563200-61566600	Weak transcription	NHDF-Ad	bronchial
45	chr3:61563400-61563800	Enhancers	Stomach Smooth Muscle	stomach
46	chr3:61563400-61564000	Enhancers	Colon Smooth Muscle	Colon
47	chr3:61563400-61564600	Enhancers	H9 Cell Line	embryonic stem cell
48	chr3:61563400-61565600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr3:61563600-61564800	Enhancers	Psoas Muscle	Psoas
50	chr3:61563600-61565000	Enhancers	H1 Cell Line	embryonic stem cell

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