Variant report

Variant	rs72889672
Chromosome Location	chr4:94119687-94119688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2904474	0.82[AFR][1000 genomes]
rs59913514	0.82[AFR][1000 genomes]
rs72887660	0.82[AFR][1000 genomes]
rs72887666	0.82[AFR][1000 genomes]
rs72887672	0.82[AFR][1000 genomes]
rs72887675	0.82[AFR][1000 genomes]
rs72889657	1.00[AFR][1000 genomes]
rs72889661	1.00[AFR][1000 genomes]
rs72889663	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1013255	chr4:94027129-94462345	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879615	chr4:94100410-94180567	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:94118600-94120200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:94119200-94121200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:94119400-94120800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr4:94119400-94121200	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:94119600-94120800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:94119600-94120800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:94119600-94120800	Enhancers	Fetal Lung	lung
8	chr4:94119600-94121200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:94119600-94121400	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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