Variant report

Variant	rs72889848
Chromosome Location	chr2:172527238-172527239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12053046	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12614709	0.89[AMR][1000 genomes]
rs12619041	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12620126	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12622772	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12622895	0.87[AMR][1000 genomes]
rs17581361	0.87[AMR][1000 genomes]
rs17615262	0.85[AMR][1000 genomes]
rs2176465	0.89[AMR][1000 genomes]
rs3736499	0.89[AMR][1000 genomes]
rs3765166	0.87[AMR][1000 genomes]
rs3765167	0.87[AMR][1000 genomes]
rs3770448	0.87[AMR][1000 genomes]
rs3770449	0.89[AMR][1000 genomes]
rs3770455	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3821093	0.85[AMR][1000 genomes]
rs55957712	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56275355	0.83[AMR][1000 genomes]
rs57718990	0.82[AMR][1000 genomes]
rs57775770	0.87[AMR][1000 genomes]
rs62182370	0.81[AMR][1000 genomes]
rs62182372	0.89[AMR][1000 genomes]
rs62182373	0.89[AMR][1000 genomes]
rs62182374	0.85[AMR][1000 genomes]
rs62182392	0.83[AMR][1000 genomes]
rs72881938	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72885532	0.85[AMR][1000 genomes]
rs72885545	0.87[AMR][1000 genomes]
rs7584258	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172525000-172529000	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr2:172525200-172527800	Weak transcription	Fetal Lung	lung
3	chr2:172525400-172529200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:172525600-172528800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr2:172526800-172529200	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:172527000-172527800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:172527200-172527800	Weak transcription	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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