Variant report

Variant	rs72890156
Chromosome Location	chr2:47759230-47759231
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56274251	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004828	chr2:47056849-47814482	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv531348	chr2:47433147-47827310	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv999576	chr2:47506116-47773960	Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv998314	chr2:47720420-47959168	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv817599	chr2:47738456-47961099	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47743600-47778200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:47748800-47761000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:47748800-47772800	Weak transcription	Gastric	stomach
4	chr2:47749000-47761800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:47749000-47771000	Weak transcription	Ovary	ovary
6	chr2:47749200-47761000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:47749200-47762400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr2:47749400-47760000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:47749400-47760600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr2:47754800-47760800	Weak transcription	Fetal Stomach	stomach
11	chr2:47755400-47761000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:47755800-47760800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr2:47756000-47760600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr2:47756000-47760600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr2:47756000-47761000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:47756000-47761200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr2:47756200-47760600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:47756200-47761200	Weak transcription	Fetal Brain Female	brain
19	chr2:47756400-47760400	Weak transcription	NH-A	brain
20	chr2:47756400-47760600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:47756400-47761800	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:47756400-47771400	Weak transcription	Brain Germinal Matrix	brain
23	chr2:47756800-47760800	Weak transcription	HSMM	muscle
24	chr2:47757000-47760800	Weak transcription	HUVEC	blood vessel
25	chr2:47757200-47759400	Enhancers	Right Ventricle	heart
26	chr2:47757400-47761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr2:47757600-47760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:47757600-47760600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr2:47757600-47760600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr2:47757600-47761000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr2:47757600-47761200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr2:47757600-47761600	Weak transcription	Fetal Brain Male	brain
33	chr2:47757600-47772400	Weak transcription	Right Atrium	heart
34	chr2:47758000-47762400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:47758800-47759800	Weak transcription	Fetal Muscle Leg	muscle
36	chr2:47758800-47760400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr2:47759000-47759800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr2:47759000-47759800	Weak transcription	Left Ventricle	heart
39	chr2:47759000-47760600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links