Variant report

Variant	rs72890857
Chromosome Location	chr18:25285185-25285186
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72890854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890860	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72890875	0.86[ASN][1000 genomes]
rs72890877	0.80[EUR][1000 genomes]
rs949196	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs949197	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833604	chr18:25226727-25417423	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25284200-25285600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:25284400-25285400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr18:25284400-25285600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr18:25284600-25285400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:25284600-25285400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:25284600-25285600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr18:25284800-25285400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:25284800-25285400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr18:25284800-25285400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:25284800-25285400	Enhancers	Fetal Kidney	kidney
11	chr18:25285000-25285400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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