Variant report

Variant	rs72890963
Chromosome Location	chr2:171743513-171743514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs67515655	1.00[AFR][1000 genomes]
rs72890932	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431801	chr2:171721493-171966493	ZNF genes & repeats Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:171741000-171745200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr2:171741600-171743600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr2:171741600-171743600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:171741800-171744800	Enhancers	HSMM	muscle
5	chr2:171742200-171745000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:171742800-171743800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:171743000-171751200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr2:171743000-171751400	Weak transcription	HSMMtube	muscle
9	chr2:171743200-171743600	Weak transcription	NHDF-Ad	bronchial
10	chr2:171743200-171748600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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