Variant report

Variant	rs7289098
Chromosome Location	chr22:33185047-33185048
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32920308-32927723..22:33178968-33185617	Hela-S3	cervix:
2	22:32170492-32188129..22:33178968-33185617	Hela-S3	cervix:
3	22:32868055-32872511..22:33178968-33185617	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000185666	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11703156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11703906	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11704023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs137501	1.00[CHB][hapmap]
rs1427377	1.00[CHB][hapmap]
rs1427378	1.00[CHB][hapmap]
rs2013564	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040437	1.00[CHB][hapmap]
rs2267184	1.00[CHB][hapmap]
rs2267185	1.00[CHB][hapmap]
rs5749512	1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5749524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs5754250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs5754266	1.00[JPT][hapmap]
rs5754280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5754281	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5754288	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62232904	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713685	1.00[CEU][hapmap]
rs737088	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs80689	1.00[CHB][hapmap]
rs933255	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33176800-33185200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea
5	chr22:33179800-33186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr22:33182000-33192800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr22:33182600-33195400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:33183200-33187600	Enhancers	HepG2	liver
9	chr22:33184400-33186000	Enhancers	Adipose Nuclei	Adipose
10	chr22:33184600-33185200	Enhancers	Fetal Muscle Trunk	muscle
11	chr22:33184600-33185600	Enhancers	Fetal Stomach	stomach
12	chr22:33184600-33185600	Enhancers	Rectal Smooth Muscle	rectum
13	chr22:33184600-33186000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr22:33184600-33186000	Enhancers	HSMMtube	muscle
15	chr22:33184600-33186200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr22:33184600-33186200	Enhancers	Osteobl	bone
17	chr22:33184800-33185200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr22:33184800-33185200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr22:33184800-33185200	Enhancers	Left Ventricle	heart
20	chr22:33184800-33185200	Enhancers	Lung	lung
21	chr22:33184800-33185200	Enhancers	Right Atrium	heart
22	chr22:33184800-33185200	Enhancers	Spleen	Spleen
23	chr22:33184800-33185400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr22:33184800-33185400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr22:33184800-33185400	Enhancers	Right Ventricle	heart
26	chr22:33184800-33185400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr22:33184800-33185400	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr22:33184800-33185600	Enhancers	Fetal Heart	heart
29	chr22:33184800-33185600	Enhancers	Fetal Muscle Leg	muscle
30	chr22:33184800-33185800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr22:33184800-33185800	Enhancers	HMEC	breast
32	chr22:33184800-33185800	Enhancers	NHDF-Ad	bronchial
33	chr22:33184800-33186000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr22:33184800-33186000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr22:33184800-33186000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr22:33184800-33186000	Enhancers	Fetal Lung	lung
37	chr22:33184800-33186000	Enhancers	Placenta	Placenta
38	chr22:33184800-33186000	Enhancers	HSMM	muscle
39	chr22:33185000-33185200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr22:33185000-33185200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr22:33185000-33185200	Flanking Active TSS	Colon Smooth Muscle	Colon
42	chr22:33185000-33185200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr22:33185000-33185400	Enhancers	H1 Cell Line	embryonic stem cell
44	chr22:33185000-33185600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr22:33185000-33185600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr22:33185000-33185800	Enhancers	Placenta Amnion	Placenta Amnion
47	chr22:33185000-33185800	Enhancers	NH-A	brain
48	chr22:33185000-33186200	Enhancers	Duodenum Smooth Muscle	Duodenum

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