Variant report

Variant	rs72892245
Chromosome Location	chr2:21678853-21678854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57772959	1.00[AMR][1000 genomes]
rs61066397	1.00[AMR][1000 genomes]
rs72900501	1.00[AMR][1000 genomes]
rs72910110	1.00[AMR][1000 genomes]
rs72910113	1.00[AMR][1000 genomes]
rs72910120	1.00[AMR][1000 genomes]
rs72910141	1.00[AMR][1000 genomes]
rs72910165	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21646800-21690600	Weak transcription	Aorta	Aorta
2	chr2:21676400-21679200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr2:21677400-21679200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:21678000-21679400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr2:21678000-21679800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:21678000-21683800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:21678400-21679800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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