Variant report

Variant	rs72892423
Chromosome Location	chr2:186283088-186283089
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11675192	0.83[ASN][1000 genomes]
rs11675629	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11676655	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11681870	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11686861	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11691490	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11691615	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11693233	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12988744	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13014616	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13014885	0.90[ASN][1000 genomes]
rs13015110	0.90[ASN][1000 genomes]
rs17331619	0.90[ASN][1000 genomes]
rs17331682	0.90[ASN][1000 genomes]
rs17403498	0.90[ASN][1000 genomes]
rs17403547	0.90[ASN][1000 genomes]
rs17403638	0.90[ASN][1000 genomes]
rs34087779	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34420134	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs34537855	1.00[ASN][1000 genomes]
rs34826735	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34969380	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35066265	1.00[ASN][1000 genomes]
rs35630311	0.90[ASN][1000 genomes]
rs35815004	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35871462	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs35920523	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66759141	0.90[ASN][1000 genomes]
rs66941454	0.90[ASN][1000 genomes]
rs6731674	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67432566	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67629903	0.83[ASN][1000 genomes]
rs67638453	1.00[ASN][1000 genomes]
rs67992386	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs71430186	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72892419	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892438	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892443	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584009	chr2:186203397-186345148	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv459982	chr2:186213755-186475590	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584012	chr2:186213755-186475590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875525	chr2:186223503-186434458	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470502	chr2:186245653-186309738	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv459983	chr2:186245653-186377253	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv584013	chr2:186245653-186377253	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv524452	chr2:186258409-186297074	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv518379	chr2:186259653-186297074	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv875526	chr2:186272059-186434458	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv875527	chr2:186272059-186475590	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186282600-186283600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr2:186283000-186283400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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