Variant report

Variant	rs72896563
Chromosome Location	chr4:110942499-110942500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11569062	1.00[AMR][1000 genomes]
rs11569162	0.88[AFR][1000 genomes]
rs72896569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73839506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763384	chr4:110939666-110942596	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110941000-110942600	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:110941200-110942600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:110941600-110942800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:110941600-110943000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:110941800-110943000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:110941800-110945400	Weak transcription	Brain Germinal Matrix	brain
7	chr4:110941800-110946200	Weak transcription	Fetal Lung	lung
8	chr4:110942400-110942600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr4:110942400-110942600	Enhancers	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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