Variant report

Variant	rs72898211
Chromosome Location	chr2:21854073-21854074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11897623	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17680118	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17680142	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2194558	0.82[AFR][1000 genomes]
rs2194559	0.82[AFR][1000 genomes]
rs2338369	0.82[AFR][1000 genomes]
rs6547698	0.82[AFR][1000 genomes]
rs6547745	1.00[EUR][1000 genomes]
rs6729222	0.82[AFR][1000 genomes]
rs72896298	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72896300	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898207	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898213	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898216	0.96[ASN][1000 genomes]
rs7574035	1.00[EUR][1000 genomes]
rs7595261	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3406784	chr2:21805088-22160765	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1011732	chr2:21822998-21857207	Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21843800-21855400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:21846600-21871200	Weak transcription	Aorta	Aorta
3	chr2:21851200-21855600	Weak transcription	Fetal Brain Female	brain
4	chr2:21852800-21856000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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