Variant report

Variant	rs72900232
Chromosome Location	chr2:53409171-53409172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11892805	1.00[AMR][1000 genomes]
rs11901662	1.00[AMR][1000 genomes]
rs7561498	1.00[AMR][1000 genomes]
rs7573834	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1011032	chr2:53384170-53433055	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53408600-53410600	Enhancers	Fetal Intestine Large	intestine
2	chr2:53408600-53410800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr2:53408600-53410800	Enhancers	Fetal Intestine Small	intestine
4	chr2:53408600-53411200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:53408800-53409600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:53408800-53409800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:53408800-53411200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:53408800-53411200	Enhancers	Fetal Kidney	kidney
9	chr2:53409000-53410800	Enhancers	Fetal Brain Male	brain
10	chr2:53409000-53411000	Enhancers	Fetal Lung	lung
11	chr2:53409000-53411200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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