Variant report

Variant	rs72900273
Chromosome Location	chr3:46512642-46512643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10490771	0.85[AMR][1000 genomes]
rs11574432	0.85[AMR][1000 genomes]
rs11574438	0.85[AMR][1000 genomes]
rs11574444	0.85[AMR][1000 genomes]
rs11575823	0.85[AMR][1000 genomes]
rs1607738	1.00[AMR][1000 genomes]
rs17078868	0.85[AMR][1000 genomes]
rs17078932	1.00[AMR][1000 genomes]
rs17078949	1.00[AMR][1000 genomes]
rs17141109	0.85[AMR][1000 genomes]
rs17141112	0.85[AMR][1000 genomes]
rs28584272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3918378	0.85[AMR][1000 genomes]
rs3918383	0.85[AMR][1000 genomes]
rs3918386	0.85[AMR][1000 genomes]
rs41469351	0.85[AMR][1000 genomes]
rs41475349	0.85[AMR][1000 genomes]
rs41499550	0.85[AMR][1000 genomes]
rs57571354	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58889017	0.85[AMR][1000 genomes]
rs58970771	1.00[AMR][1000 genomes]
rs59568150	1.00[AMR][1000 genomes]
rs60700685	1.00[AMR][1000 genomes]
rs60938611	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61151866	1.00[AMR][1000 genomes]
rs61389423	1.00[AMR][1000 genomes]
rs61550542	1.00[AMR][1000 genomes]
rs61740461	1.00[AMR][1000 genomes]
rs72900271	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900285	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900287	0.85[AMR][1000 genomes]
rs72900298	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72902113	1.00[AMR][1000 genomes]
rs72902116	1.00[AMR][1000 genomes]
rs72902152	1.00[AMR][1000 genomes]
rs9856096	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46507400-46522400	Weak transcription	Gastric	stomach
2	chr3:46507600-46514200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:46507800-46513400	Enhancers	Left Ventricle	heart
4	chr3:46509200-46513400	Enhancers	Psoas Muscle	Psoas
5	chr3:46509400-46514000	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr3:46510800-46513200	Enhancers	Pancreas	Pancrea
7	chr3:46511000-46513600	Weak transcription	Primary B cells from cord blood	blood
8	chr3:46511200-46514600	Enhancers	Spleen	Spleen
9	chr3:46511600-46515400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:46511800-46530200	Weak transcription	Right Atrium	heart
11	chr3:46512000-46513000	Weak transcription	Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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