Variant report

Variant	rs72900509
Chromosome Location	chr4:111040735-111040736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:111039067..111041726-chr4:111116886..111119654,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000170522	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57109255	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72898602	0.97[AFR][1000 genomes]
rs72900510	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111024200-111049800	Weak transcription	Fetal Stomach	stomach
2	chr4:111026000-111061000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:111026400-111041200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:111026400-111046000	Weak transcription	Left Ventricle	heart
5	chr4:111026400-111049200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:111028000-111047600	Weak transcription	Gastric	stomach
7	chr4:111028600-111040800	Weak transcription	NH-A	brain
8	chr4:111028600-111041200	Weak transcription	Small Intestine	intestine
9	chr4:111028600-111054000	Weak transcription	HepG2	liver
10	chr4:111029600-111040800	Weak transcription	Fetal Lung	lung
11	chr4:111029600-111054200	Weak transcription	Liver	Liver
12	chr4:111029800-111041000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:111029800-111041000	Weak transcription	HSMM	muscle
14	chr4:111030000-111040800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr4:111030000-111060800	Weak transcription	A549	lung
16	chr4:111030000-111093800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:111030000-111098800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:111031200-111041000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:111031200-111043800	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:111031400-111041000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:111031800-111066200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:111037600-111051400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr4:111038000-111051600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr4:111038200-111040800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr4:111038200-111051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr4:111038200-111056400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:111038400-111040800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr4:111038600-111041000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr4:111038600-111041000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr4:111038600-111053000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:111038800-111043000	Weak transcription	K562	blood
32	chr4:111039800-111041400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:111039800-111041400	Enhancers	Fetal Intestine Large	intestine
34	chr4:111040000-111040800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:111040000-111040800	Enhancers	Fetal Thymus	thymus
36	chr4:111040000-111041000	Enhancers	Dnd41	blood
37	chr4:111040000-111041400	Enhancers	Duodenum Mucosa	Duodenum
38	chr4:111040000-111041800	Enhancers	Fetal Intestine Small	intestine
39	chr4:111040000-111042000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr4:111040000-111042200	Enhancers	Placenta	Placenta
41	chr4:111040200-111040800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr4:111040200-111040800	Enhancers	Primary T cells fromperipheralblood	blood
43	chr4:111040200-111040800	Enhancers	Primary hematopoietic stem cells	blood
44	chr4:111040200-111041400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:111040200-111041400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr4:111040200-111042000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:111040200-111042000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr4:111040200-111042000	Enhancers	Osteobl	bone
49	chr4:111040400-111041200	Enhancers	Fetal Heart	heart
50	chr4:111040400-111041400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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