Variant report

Variant	rs72900750
Chromosome Location	chr4:110550721-110550722
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10027369	1.00[AMR][1000 genomes]
rs12331637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28411711	0.83[AFR][1000 genomes]
rs28547481	0.83[AFR][1000 genomes]
rs28649856	0.83[AFR][1000 genomes]
rs5030570	0.80[AFR][1000 genomes]
rs60584554	1.00[AMR][1000 genomes]
rs72886526	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72886551	0.91[AFR][1000 genomes]
rs9999936	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:110533400-110552800	Weak transcription	Primary B cells from cord blood	blood
3	chr4:110536000-110552800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:110536400-110552800	Weak transcription	Adipose Nuclei	Adipose
5	chr4:110536400-110552800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:110538400-110552000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr4:110539400-110550800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr4:110544200-110552800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:110544200-110552800	Weak transcription	Ovary	ovary
10	chr4:110545200-110552800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:110545400-110552800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:110546000-110559600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr4:110546200-110550800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr4:110546200-110550800	Weak transcription	Esophagus	oesophagus
15	chr4:110546200-110550800	Weak transcription	Placenta	Placenta
16	chr4:110546200-110551000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr4:110546200-110552000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:110546200-110552600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:110546200-110552600	Weak transcription	Fetal Intestine Large	intestine
20	chr4:110546200-110552800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:110546200-110552800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr4:110546200-110552800	Weak transcription	Small Intestine	intestine
23	chr4:110546200-110566400	Weak transcription	Fetal Thymus	thymus
24	chr4:110546400-110552800	Weak transcription	Right Atrium	heart
25	chr4:110546600-110580600	Weak transcription	Thymus	Thymus
26	chr4:110548000-110554200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:110548400-110553600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr4:110548600-110553800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:110549000-110550800	Enhancers	Primary T cells from cord blood	blood
30	chr4:110549200-110551200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:110549400-110550800	Enhancers	Primary hematopoietic stem cells	blood
32	chr4:110549400-110551200	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr4:110549600-110552000	Weak transcription	Fetal Intestine Small	intestine
34	chr4:110549600-110552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:110549800-110552600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr4:110549800-110552600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:110550000-110551800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr4:110550200-110552000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:110550200-110552800	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr4:110550600-110551000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:110550600-110551400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:110550600-110551600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:110550600-110569200	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links