Variant report

Variant	rs7290116
Chromosome Location	chr22:30450007-30450008
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs56727193	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56822704	1.00[AMR][1000 genomes]
rs56978667	1.00[AMR][1000 genomes]
rs58564057	1.00[AMR][1000 genomes]
rs58967191	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60017483	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60022678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60093195	1.00[AMR][1000 genomes]
rs60098050	1.00[AMR][1000 genomes]
rs7291683	1.00[AMR][1000 genomes]
rs73396831	1.00[AMR][1000 genomes]
rs73396837	1.00[AMR][1000 genomes]
rs73396841	1.00[AMR][1000 genomes]
rs73396843	1.00[AMR][1000 genomes]
rs73396848	1.00[AMR][1000 genomes]
rs73396856	1.00[AMR][1000 genomes]
rs73396863	1.00[AMR][1000 genomes]
rs73396872	1.00[AMR][1000 genomes]
rs73396883	1.00[AMR][1000 genomes]
rs73396885	1.00[AMR][1000 genomes]
rs73396886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73396894	1.00[AMR][1000 genomes]
rs73396896	1.00[AMR][1000 genomes]
rs73396902	1.00[AMR][1000 genomes]
rs73398629	1.00[AMR][1000 genomes]
rs73398630	1.00[AMR][1000 genomes]
rs73398645	1.00[AMR][1000 genomes]
rs73398647	1.00[AMR][1000 genomes]
rs73398650	1.00[AMR][1000 genomes]
rs73398653	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398654	1.00[AMR][1000 genomes]
rs73398659	1.00[AMR][1000 genomes]
rs73398662	1.00[AMR][1000 genomes]
rs73398664	1.00[AMR][1000 genomes]
rs73398671	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73398683	1.00[AMR][1000 genomes]
rs73398696	1.00[AMR][1000 genomes]
rs73398701	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400604	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400618	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400625	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400627	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400629	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73400637	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs879447	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064081	chr22:29826745-30623965	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv544677	chr22:29826745-30623965	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30435000-30450600	Weak transcription	Gastric	stomach
2	chr22:30441400-30450600	Weak transcription	Adipose Nuclei	Adipose
3	chr22:30444800-30450200	Weak transcription	Fetal Intestine Small	intestine
4	chr22:30445200-30450200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr22:30449400-30452400	Enhancers	HepG2	liver
6	chr22:30450000-30451200	Enhancers	Fetal Heart	heart

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