Variant report
| Variant | rs72901466 |
|---|---|
| Chromosome Location | chr2:187858608-187858609 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10174908 | 0.89[EUR][1000 genomes] |
| rs10931266 | 0.89[EUR][1000 genomes] |
| rs13419039 | 0.89[EUR][1000 genomes] |
| rs13422204 | 0.89[EUR][1000 genomes] |
| rs13427603 | 0.89[EUR][1000 genomes] |
| rs13427827 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs17754154 | 0.83[EUR][1000 genomes] |
| rs17754185 | 0.85[EUR][1000 genomes] |
| rs2599377 | 0.87[EUR][1000 genomes] |
| rs28564212 | 0.83[EUR][1000 genomes] |
| rs72899454 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs72899468 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72899476 | 0.86[EUR][1000 genomes] |
| rs72899483 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72901418 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72901421 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72901461 | 0.83[EUR][1000 genomes] |
| rs72901464 | 0.83[EUR][1000 genomes] |
| rs72901468 | 0.83[EUR][1000 genomes] |
| rs72901483 | 0.87[EUR][1000 genomes] |
| rs72901488 | 0.87[EUR][1000 genomes] |
| rs72901490 | 0.87[EUR][1000 genomes] |
| rs7593908 | 0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7593919 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7594512 | 0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949700 | chr2:187713412-188361211 | Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv528437 | chr2:187778830-187907901 | Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv999207 | chr2:187787121-187924667 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv536084 | chr2:187787121-187924667 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv3367984 | chr2:187856607-187861205 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv875553 | chr2:187856937-188067355 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:187858600-187859800 | Weak transcription | Muscle Satellite Cultured Cells | -- |
| 2 | chr2:187858600-187859800 | Weak transcription | HUVEC | blood vessel |
