Variant report

Variant	rs72903397
Chromosome Location	chr3:85132874-85132875
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs72903359	0.90[AFR][1000 genomes]
rs72903363	0.90[AFR][1000 genomes]
rs72903394	1.00[AFR][1000 genomes]
rs72903400	1.00[AFR][1000 genomes]
rs72905205	0.91[AFR][1000 genomes]
rs72905212	1.00[AFR][1000 genomes]
rs72905225	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002058	chr3:84757044-85389876	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv492289	chr3:85066623-85319147	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv877093	chr3:85101501-85194054	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv590897	chr3:85122624-85187085	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv877094	chr3:85124697-85253981	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85130400-85133800	Enhancers	Brain Substantia Nigra	brain
2	chr3:85131000-85135800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr3:85131200-85136400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:85131800-85135800	Weak transcription	Fetal Brain Male	brain
5	chr3:85132000-85133000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:85132000-85136000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:85132000-85136200	Weak transcription	Brain Angular Gyrus	brain
8	chr3:85132000-85137000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr3:85132000-85137400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:85132000-85140400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:85132000-85141600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:85132200-85136400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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