Variant report

Variant	rs72905911
Chromosome Location	chr18:39157801-39157802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10502769	0.85[EUR][1000 genomes]
rs10502770	0.84[EUR][1000 genomes]
rs10502771	0.82[EUR][1000 genomes]
rs13381575	0.83[EUR][1000 genomes]
rs1560844	0.82[EUR][1000 genomes]
rs16974995	0.85[EUR][1000 genomes]
rs16974999	0.85[EUR][1000 genomes]
rs16975000	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16975004	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16975007	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16975010	0.84[EUR][1000 genomes]
rs16975012	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs16975017	0.86[EUR][1000 genomes]
rs16975021	0.84[EUR][1000 genomes]
rs16975022	0.84[EUR][1000 genomes]
rs16975025	0.84[EUR][1000 genomes]
rs16975049	0.83[EUR][1000 genomes]
rs1942063	0.82[EUR][1000 genomes]
rs1942065	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1942069	0.84[EUR][1000 genomes]
rs1942070	0.84[EUR][1000 genomes]
rs2156006	0.83[EUR][1000 genomes]
rs2315174	0.83[EUR][1000 genomes]
rs35462279	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55797333	0.82[EUR][1000 genomes]
rs56341064	0.85[EUR][1000 genomes]
rs56812327	0.82[EUR][1000 genomes]
rs56933066	0.83[EUR][1000 genomes]
rs57249168	0.82[EUR][1000 genomes]
rs58350157	0.81[EUR][1000 genomes]
rs60047677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6507424	0.82[EUR][1000 genomes]
rs7229794	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72903976	0.84[EUR][1000 genomes]
rs72903977	0.84[EUR][1000 genomes]
rs72903981	0.84[EUR][1000 genomes]
rs72903982	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72903987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72903996	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72905903	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72905904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72905906	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72905909	0.84[EUR][1000 genomes]
rs72905915	0.89[EUR][1000 genomes]
rs72905923	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72905924	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72905948	0.86[EUR][1000 genomes]
rs72905963	0.82[EUR][1000 genomes]
rs72905965	0.82[EUR][1000 genomes]
rs72905967	0.82[EUR][1000 genomes]
rs72905979	0.82[EUR][1000 genomes]
rs72907848	0.82[EUR][1000 genomes]
rs734357	0.83[EUR][1000 genomes]
rs73450796	0.83[EUR][1000 genomes]
rs8087434	0.82[EUR][1000 genomes]
rs8087485	0.83[EUR][1000 genomes]
rs9956251	0.81[EUR][1000 genomes]
rs9965809	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909564	chr18:38739067-39179256	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1066869	chr18:38742896-39680723	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv543685	chr18:38742896-39680723	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv2267	chr18:39123940-39169583	Enhancers Weak transcription Strong transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv949609	chr18:39126941-40070286	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	esv3348869	chr18:39156604-39158502	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3405340	chr18:39157004-39158002	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:39150400-39161400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:39154400-39158200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:39155800-39158200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr18:39156600-39158400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:39157600-39160000	Enhancers	Liver	Liver
6	chr18:39157800-39159200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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