Variant report

Variant	rs72906018
Chromosome Location	chr3:46331956-46331957
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10490771	0.85[AMR][1000 genomes]
rs11574432	0.85[AMR][1000 genomes]
rs11574438	0.85[AMR][1000 genomes]
rs11574444	0.85[AMR][1000 genomes]
rs11575823	0.85[AMR][1000 genomes]
rs17141109	0.85[AMR][1000 genomes]
rs17141112	0.85[AMR][1000 genomes]
rs3918378	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3918383	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3918386	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs41469351	0.85[AMR][1000 genomes]
rs41475349	0.85[AMR][1000 genomes]
rs41499550	0.85[AMR][1000 genomes]
rs61028587	0.87[AFR][1000 genomes]
rs72904172	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46324600-46336600	Weak transcription	Gastric	stomach
2	chr3:46327200-46337800	Weak transcription	Dnd41	blood
3	chr3:46327800-46334800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr3:46328400-46332200	Weak transcription	Fetal Brain Male	brain
5	chr3:46329000-46334200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:46329200-46332800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr3:46329200-46334200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr3:46329200-46338600	Weak transcription	Thymus	Thymus
9	chr3:46330400-46332600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46331000-46332000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr3:46331200-46333800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr3:46331200-46334200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr3:46331400-46333800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr3:46331400-46334200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr3:46331400-46334200	Weak transcription	GM12878-XiMat	blood
16	chr3:46331400-46334800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:46331400-46334800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:46331400-46335400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:46331800-46333400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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