Variant report

Variant	rs72907101
Chromosome Location	chr6:82161751-82161752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs72893576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893578	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72893585	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72907061	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72907062	0.95[ASN][1000 genomes]
rs72907079	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72907081	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7757808	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7771802	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr6:82159400-82162000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:82159600-82162000	Enhancers	NHDF-Ad	bronchial
4	chr6:82159600-82162200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:82159800-82162400	Enhancers	Hela-S3	cervix
6	chr6:82160000-82162000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:82160600-82162200	Enhancers	Stomach Mucosa	stomach
8	chr6:82160800-82161800	Weak transcription	Fetal Heart	heart
9	chr6:82160800-82163000	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr6:82161200-82161800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:82161200-82162000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:82161200-82162200	Enhancers	Osteobl	bone
13	chr6:82161400-82161800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:82161400-82161800	Enhancers	HUVEC	blood vessel
15	chr6:82161400-82162000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr6:82161400-82162000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:82161400-82162000	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:82161400-82162000	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:82161400-82162000	Active TSS	Sigmoid Colon	Sigmoid Colon
20	chr6:82161400-82162000	Enhancers	NH-A	brain
21	chr6:82161400-82162200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:82161400-82162400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr6:82161400-82162400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:82161600-82162000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:82161600-82162600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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