Variant report

Variant	rs72908412
Chromosome Location	chr4:120724376-120724377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10032434	0.89[ASN][1000 genomes]
rs17006113	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17006546	0.92[ASN][1000 genomes]
rs17006665	0.91[ASN][1000 genomes]
rs2202273	0.89[ASN][1000 genomes]
rs2304799	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28429734	0.83[ASN][1000 genomes]
rs35920721	0.89[ASN][1000 genomes]
rs4505807	0.89[ASN][1000 genomes]
rs62319694	0.89[ASN][1000 genomes]
rs72910489	0.89[ASN][1000 genomes]
rs7699214	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120724200-120724400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr4:120724200-120724400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:120724200-120724400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:120724200-120724400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:120724200-120724400	Bivalent/Poised TSS	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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